One thing I'm wondering about is whether the charging is causing the issue. I've noticed that if the charger is left plugged in significantly after the unit has finished charging (charger goes to green from red and battery lights are all blue) the bike starts to lose charge again. We're unplugging ours as soon as we notice it's fully charged.
On the error code, the manual states that this is due to a torque sensor issue. If your bike hasn't been swapped over completely yet, I'd push for this. You have to be able to rely on it.